Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating

Authors

Mazurenko, S., Kunka, A., Beerens, K., Johnson, C. M., Damborsky, J., Prokop, Z.

Source

SCIENTIFIC REPORTS 7: 16321 (2017)

Abstract

Studies of protein unfolding mechanisms are critical for understanding protein functions inside cells, de novo protein design as well as defining the role of protein misfolding in neurodegenerative disorders. Calorimetry has proven indispensable in this regard for recording full energetic profiles of protein unfolding and permitting data fitting based on unfolding pathway models. While both kinetic and thermodynamic protein stability are analysed by varying scan rates and reheating, the latter is rarely used in curve-fitting, leading to a significant loss of information from experiments. To extract this information, we propose fitting both first and second scans simultaneously. Four most common single-peak transition models are considered: (i) fully reversible, (ii) fully irreversible, (iii) partially reversible transitions, and (iv) general three-state models. The method is validated using calorimetry data for chicken egg lysozyme, mutated Protein A, three wild-types of haloalkane dehalogenases, and a mutant stabilized by protein engineering. We show that modelling of reheating increases the precision of determination of unfolding mechanisms, free energies, temperatures, and heat capacity differences. Moreover, this modelling indicates whether alternative refolding pathways might occur upon cooling. The Matlab-based data fitting software tool and its user guide are provided as a supplement.

Full text

Citation

Mazurenko, S., Kunka, A., Beerens, K., Johnson, C. M., Damborsky, J., Prokop, Z., 2017: Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating. Scientific Reports 7: 16321.

Three New Masters of Science: Zuzana, Martin and Pavel
Joseph Fourier Prize for Milos
The Dean’s Award for Veronika
A New Addition to the Team: Verunka
The Best Poster Award for Milos Musil
Martin the Winner of Sigma-Aldrich Competition
Web Server CalFitter Accompanied by an Article