Identification of Tunnels in Proteins, Nucleic Acids, Inorganic Materials and Molecular Ensembles

Authors

Damborsky, J., Petrek, M., Banas, P., Otyepka, M.

Source

BIOTECHNOLOGY JOURNAL 2: 62-67 (2007)

Abstract

The knowledge of the access paths connecting interior of molecular systems with surrounding environment is important for understanding of structure-function relationships and engineering of molecules for biotechnological applications. CAVER is a computer program developed for calculations of tunnels, channels or pores in the biomolecules, inorganic materials and molecular ensembles. The algorithm performs a skeleton search based on a reciprocal distance function grid. The algorithm is implemented in the stand-alone version, web version and as plug-in for PyMol. CAVER is available from the web site http://loschmidt.chemi.muni.cz/caver.

Full text

Citation

Damborsky, J., Petrek, M., Banas, P., Otyepka, M., 2007: Identification of Tunnels in Proteins, Nucleic Acids, Inorganic Materials and Molecular Ensembles. Biotechnology Journal 2: 62-67.

Martin to Present at ProtStab’2021
Nikola’s Success at SOC
The Dean’s Award for Jan
Gaspar Presented at 18th IUGEN International Winter School
Event Biotechnology Innovations for the Cosmetic Industry
David Presented at ESAB Webinar
Poster Award for Andrea