{"id":860,"date":"2013-02-22T12:24:45","date_gmt":"2013-02-22T12:24:45","guid":{"rendered":"http:\/\/loschmidt.chemi.muni.cz\/peg\/?page_id=860"},"modified":"2020-08-17T13:38:26","modified_gmt":"2020-08-17T13:38:26","slug":"research-infrastructure","status":"publish","type":"page","link":"https:\/\/loschmidt.chemi.muni.cz\/peg\/group\/research-infrastructure\/","title":{"rendered":"Research Infrastructure"},"content":{"rendered":"<h2>Computer Modelling<\/h2>\n<h3>Hardware<\/h3>\n<ul>\n<li>22 nodes, 2x 10-core Intel Xeon, 378 GB RAM, 2x NVIDIA K2 GPU, 300 GB HDD<\/li>\n<li>7 nodes, 2x 8-core Intel Xeon, 128 GB RAM, 1200 GB HDD<\/li>\n<li>12 nodes, 6-core Intel Xeon, 12 GB RAM, 600 GB HDD<\/li>\n<li>2 nodes, 48-core AMD Opteron, 32 GB RAM, 600 GB HDD<\/li>\n<li>Oculus Rift virtual reality headset<\/li>\n<\/ul>\n<h3>Software<\/h3>\n<ul>\n<li>AMBER, University of California, San Francisco, USA<\/li>\n<li>AUTODOCK, The Scripps Research Institute, La Jolla, USA<\/li>\n<li>BIOEDIT, North Carolina State University, Raleigh, USA<\/li>\n<li>CAVER, CaverSoft, Czech Republic<\/li>\n<li>CHARMM, Harvard University, Cambridge, USA<\/li>\n<li>DOCK, University of California, San Francisco, USA<\/li>\n<li>FOLD-X, European Molecular Biology Laboratory, Germany<\/li>\n<li>GAMESS-UK, Daresbury Laboratory, Daresbury, UK<\/li>\n<li>GAUSSIAN, Gaussian, Inc., Carnegie, USA<\/li>\n<li>MODELLER, University of California, San Francisco, USA<\/li>\n<li>MOPAC, Fujitsu Ltd., Japan<\/li>\n<li>ROSETTA, University of Washington, Seattle, USA<\/li>\n<li>SIMCA, Umetrics, Umea, Sweden<\/li>\n<li>STATISTICA, StatSoft, Inc., Tulsa, USA<\/li>\n<li>TRITON, Masaryk University, Brno, Czech Republic<\/li>\n<li>VECTOR NTI, Emory University, Atlanta, USA<\/li>\n<li>WHATIF, the University of Nijmegen, The Netherlands<\/li>\n<\/ul>\n<h2>Molecular Biology<\/h2>\n<h3>Laboratory of Molecular Biology<\/h3>\n<ul>\n<li>Electroporator ECM 399 Generator, BTX, Canada<\/li>\n<li>Rapid Translation System ProteoMaster, Roche, France<\/li>\n<li>Biohazard BoxBioban 48, Steril, Italy<\/li>\n<li>Biohazard Box Safe Fast Light<\/li>\n<li>Biological Thermostat BT 120M, Laboratory equipment Prague, Czech Republic<\/li>\n<li>Max Pro Thermal Cycler, Esco Healthcare Ltd., UK (2x)<\/li>\n<li>Block Heater HB-1, Wealtec Corp., USA<\/li>\n<li>Dry Bath Incubator, Major Science, USA<\/li>\n<li>Centrifuge Mikro 120, Hettich, Germany<\/li>\n<li>Centrifuge Mikro 20, Hettich, Germany<\/li>\n<li>Centrifuge Cooled Micro 200R, Hettich, Germany<\/li>\n<li>Concentrator centrifuge DNA 120-230 SpeedVac, Thermo, USA<\/li>\n<li>Vibrax VRX Basic, IKA Laboratory Equipment, Germany<\/li>\n<\/ul>\n<h3>Laboratory of Robotic Screening and Protein Purification<\/h3>\n<ul>\n<li>Colony Picking Robot CP7200, Norgren System, USA<\/li>\n<li>Liquid Handling Robot Microlab StarLet Manuload, Hamilton, USA<\/li>\n<li>Microplate Reader Tecan Sunrise, Tecan, Switzerland<\/li>\n<li>Microplate Reader FLUOstar OPTIMA, BMG Labtech, Germany<\/li>\n<li>FPLC BioLogic DuoFlow, Bio-Rad, USA (2x)<\/li>\n<li>FPLC Akta Purifier 10, GE Healthcare, USA (2x)<\/li>\n<li>Shaking Water Bath GLS Aqua Plus, Grant Instruments, UK (3x)<\/li>\n<\/ul>\n<h2>Enzymology and Microbiology<\/h2>\n<h3>Laboratory of Fermentations<\/h3>\n<ul>\n<li>Bioreactor Biostat B Plus (vessel 1 and 2, 1.0 L), Sartorius Stedim, Germany<\/li>\n<li>Bioreactor Labfors 3 (7.5 L), Infors HT, Switzerland<\/li>\n<li>Bioreactor Labfors 3 (2.0 L), Infors HT, Switzerland<\/li>\n<li>Mini-PROTEAN Tetra Electrophoresis System, Bio-Rad, USA<\/li>\n<li>Sub-Cell GT Agarose Gel Electrophoresis System, Bio-Rad, USA<\/li>\n<li>BioDoc-It 220 Imaging System UVP with transilluminator M-26r, UVP, USA<\/li>\n<li>Gel Dryer Cleaver, Cleaver Scientific, UK<\/li>\n<li>Biological microscope LMI B, Intraco Micro, Czech Republic<\/li>\n<li>Stereomicroscope STM 701, Intraco Micro, Czech Republic<\/li>\n<\/ul>\n<h3>Technology Room<\/h3>\n<ul>\n<li>Sonic Dismembrator FB705, Fisher Scientific, USA<\/li>\n<li>Ultrasonic Processor, Hielscher UP200S, Germany<\/li>\n<li>Select Neptune Ultimate, Milli Q water, Purite Ltd., UK<\/li>\n<li>Centrifuge 6K15, SIGMA Laborzentrifugen, Germany<\/li>\n<li>Centrifuge 6K16, SIGMA Laborzentrifugen, Germany (2x)<\/li>\n<li>Centrifuge 2-16K, SIGMA Laborcentrifugen, Germany<\/li>\n<li>High-Performance Centrifuge Avanti J-30I, Beckman Coulter, USA<\/li>\n<li>Ultralow Temperature Freezer Innova U725, New Brunswick Scientific, USA<\/li>\n<li>Orbital Incubator Innova 44, New Brunswick Scientific, USA (3x)<\/li>\n<li>Freeze Dryer ALPHA 1-2 LD, Martin Christ, Germany<\/li>\n<li>Freeze Dryer Scanvac CoolSafe, Labogene, Denmark<\/li>\n<li>Ice Flaker GB 902, Brema Ice Makers, Italy<\/li>\n<li>Shaking Incubator NB-205, N-Biotek Inc., South Korea (3x)<\/li>\n<li>Thermal Incubator MIR-262, Sanyo, Japan<\/li>\n<li>pH meter CyberScan pH1500, Eutech Instruments, USA<\/li>\n<li>Analytical Balances AP-225V, Phoenix Instrument, Germany<\/li>\n<li>Balances ACB-300, Adam Equipment, UK<\/li>\n<li>Precision Electronic Balance HR120, A&amp;D, Japan<\/li>\n<\/ul>\n<h3>Washing Room<\/h3>\n<ul>\n<li>Autoclave, Tuttnauer 2540EL, The Netherlands<\/li>\n<li>Autoclave, Tuttnauer 5075 ELVC, The Netherlands<\/li>\n<li>Autoclave MLS-3780 78L, Sanyo, Japan<\/li>\n<li>Autoclave MLS-3781 78L, Sanyo, Japan<\/li>\n<li>Dish Washer Miele G7883CD, Miele, Germany<\/li>\n<li>Drying Owen MOV-212, Sanyo, Japan<\/li>\n<\/ul>\n<h3>Laboratory of Enzyme Kinetics<\/h3>\n<ul>\n<li>Isothermal Titration Calorimeter VP-ITC, GE Healthcare, USA<\/li>\n<li>Differential Scanning Microcalorimeter VP-Capillary DSC, GE Healthcare, USA<\/li>\n<li>Gel permeation chromatography system with tetra detection (UV, IR, refractive index, RALS\/LALS), Malvern, UK<\/li>\n<li>Microplate Reader Synergy H4, BioTek, USA<\/li>\n<li>Rapid Quench-Flow, QFM-400, Biologic, France<\/li>\n<li>Shaker GFL 3006, GFL, Germany<\/li>\n<li>Spectrophotometer Ultrospec 1000, Pharmacia Biotech, Sweden<\/li>\n<li>Spectrophotometer Biomate 3S, Thermo Scientific, USA<\/li>\n<li>Spectropolarimeter Chirascan, Applied Photophysics, UK<\/li>\n<li>Spectrofluorometer FloroMax-4, HORIBA Jobin Yvon, France<\/li>\n<li>Stopped-Flow SFM-300\/MOS-200 (UV-VIS, fluorescence, anisotropy, t-Jump), Biologic, France<\/li>\n<li>Stopped-Flow SFM-300\/MOS-500 (UV-VIS, circular dichroism, fluorescence, anisotropy), Biologic, France<\/li>\n<li>UNcle with fluorescence, SLS and DLS mode, Unchained Lab, USA<\/li>\n<li>Thermostatic Water Bath GLS400 (shaking), Grant, UK<\/li>\n<li>Thermostatic Water Bath OLS200 (shaking) with a cooling system, Grant, UK<\/li>\n<li>Thermostatic Water Bath GLS Aqua 18 Plus (shaking), Grant, UK<\/li>\n<li>Vacuum Rotavapor R-215 Professional, Buchi Labortechnik, Switzerland<\/li>\n<li>Vacuum Pump V-700, Buchi Labortechnik, Switzerland<\/li>\n<li>Vacuum Controller V-855, Buchi Labortechnik, Switzerland<\/li>\n<li>Crystal Gryphon,ARI &#8211; Art Robbins Instruments, USA<\/li>\n<\/ul>\n<h2>Chromatography<\/h2>\n<h3>Laboratory of Gas and Liquid Chromatography<\/h3>\n<ul>\n<li>Analytical Autocalibrated Balance, Adam AAA 160L, UK<\/li>\n<li>Gas Chromatograph 6890N (GC-2xFID), Agilent, USA<\/li>\n<li>Gas Chromatograph 7890A CTC sampler (GC-2xFID), Agilent, USA<\/li>\n<li>HPLC 1100 (UV-VIS, RID), Agilent, USA<\/li>\n<li>HPLC-IC, ICS-5000+, Thermo\/Dionex, USA<\/li>\n<li>Mass Spectrometer 5975C MSD and Gas Chromatograph 7890A (GC-MS), Agilent, USA<\/li>\n<li>GC-MS Trace Ultra ISQ, Robotic sampler TriPlus RSH, The Thermo Scientific, USA<\/li>\n<li>Capillary electrophoresis, NEXT, Prince Technologies, The Netherlands<\/li>\n<\/ul>\n<h3>Laboratory of Microfluidics<\/h3>\n<ul>\n<li>Mitos Dropix, Dolomite, United Kingdom<\/li>\n<li>Plasma system FEMTO, Diener, Germany<\/li>\n<li>IX51 Inverted Microscope, Olympus, Japan<\/li>\n<li>Fluorescence microscope MVX 10, Olympus, Japan<\/li>\n<li>3D laser scanning microscope Lext OLS4100, Olympus, Japan<\/li>\n<li>i-SPEED TR camera, Olympus, Japan<\/li>\n<li>Fusion 200 syringe pumps, Chemyx, USA<\/li>\n<li>neMESYS low-pressure syringe pump system, Cetoni, Germany<\/li>\n<li>Microfluidic flow control system, Elveflow, France<\/li>\n<li>Puncher, Accu-Punch MP-10-UNV, Syneo, USA<\/li>\n<li>Spin Coater WS-650-23, Laurell Technologies Corporation, United Kingdom<\/li>\n<li>High-Performance SLA DLP 3D Printer Titan 2, Kudo3D, USA<\/li>\n<li>Laser engraver RayJet 50, Trotec Laser, Austria<\/li>\n<li>Capillary-based Microfluidic Platform, in-house<\/li>\n<\/ul>\n<h3>Computational Tools for Structural Biology<\/h3>\n<ul>\n<li>A Linux-based workstation equipped with Nvidia 3D vision kit including 3D vision glasses<\/li>\n<li>XDS package for processing, indexing and merging crystallographic data (MPI, Heidelberg, Germany)<\/li>\n<li>iMOSFL package for processing, indexing and merging crystallographic data (MRC, Cambridge, UK)<\/li>\n<li>CCP4 suite with many useful tools\/software for macromolecular crystallography (STFC Daresbury Laboratory, Warrington, UK)<\/li>\n<li>PHENIX: software for automated determination of molecular structures (University of California, Berkeley, USA)<\/li>\n<li>COOT: manual model building and interpretation of electron density maps (MRC, Cambridge, UK)<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Computer Modelling Hardware 22 nodes, 2x 10-core Intel Xeon, 378 GB RAM, 2x NVIDIA K2 GPU, 300 GB HDD 7 nodes, 2x 8-core Intel Xeon, 128 GB RAM, 1200 GB HDD 12 nodes, 6-core Intel Xeon, 12 GB RAM, 600 GB HDD 2 nodes, 48-core AMD Opteron, 32 GB RAM, 600 GB HDD Oculus Rift [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":414,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"","meta":{"ngg_post_thumbnail":0,"footnotes":""},"class_list":["post-860","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/pages\/860","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/comments?post=860"}],"version-history":[{"count":29,"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/pages\/860\/revisions"}],"predecessor-version":[{"id":5543,"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/pages\/860\/revisions\/5543"}],"up":[{"embeddable":true,"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/pages\/414"}],"wp:attachment":[{"href":"https:\/\/loschmidt.chemi.muni.cz\/peg\/wp-json\/wp\/v2\/media?parent=860"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}