PredictSNP2 standalone

This stand-alone application evaluates user provided mutations using PredictSNP2 consensus approach. In contrast to the on-line version of classifier, this standalone version does not provide users with relevant links to the databases and genome browsers. It only accepts simple format of input data (without HGVS identifies) and input data has to be mapped into GCHR37 (hg 19) coordinates.

We recommend using the online version of PredictSNP2 classifier which is able to compute all required outputs. Moreover, the online version also provides experimental annotations from Clinvar, OMIM, RegulomeDB, Haploreg database, GenBank, dbSNP database and links to UCSC and Ensebmle genome browsers. The web service is available on the following URL: http://loschmidt.chemi.muni.cz/predictsnp2.

Latest release (v1.0)

• Release date: 2016-12-02

Files

• Scripts and README (v1.0)
• All possible SNVs of GRCh37/hg19 [ file (203G) | tabbix index (2.7M) ]

SHA1 checksums

• 883db94ef2a80459f88f3b121ccd5f67ebff4d18    predictsnp2.vcf.gz
• 16ea97dcd46419c98c8d99c817a68cfcfc497200    predictsnp2.vcf.gz.tbi