Bachelor Theses
| Name | Thesis |
|---|---|
| Makuch Tomas | Computational Analysis of the FYY Protein (Department of Physics, Biophysics, 2024-2025) |
| Bryja Matej | Analysis of Protein-Protein Interactions Using In Silico Methods With Focus on Thrombolytic Staphylokinase (Department of Biochemistry, Bioinformatics, 2024-2025) |
| Velatova Nikola | Genetic Variants of Apolipoprotein E (ApoE) and Their Roles in Neurodegenerative Diseases (Department of Experimental Biology, Medical Genetics and Molecular Diagnostics, 2021-2025) |
| Demovic Matej | Interpreting Protein Molecular Dynamics Data with Explainable Artificial Intelligence (RCX, Computational Biology and Biomedicine, 2024-2025) |
| Volf Eduard | Machine Learning-Based Tools for Predicting B-cell-dependent Immune Response to Protein-Bbased Therapeutics (Department of Experimental Biology, Medical Genetics and Molecular Diagnostics, 2022-2025) |
| Kapustova Linda | Identification and Study of Potential Drugs Targeting Apolipoprotein E4 in Alzheimer’s Disease Using Molecular Modelling Methods (Department of Biochemistry, 2023-2024) |
| Havlasek Martin | Probing the Limits of Modern Approaches to Protein Stabilization (Department of Biochemistry, 2021-2023) |
| Kabourek Petr | LLWS: REST Backend for Centralized Execution of Bioinformatics Calculations (Department of Computer Systems and Communications, FI MU, 2019-2023) |
| Pailozian Karen | Machine Learning-based Prediction of Protein Melting Temperatures for Discovery of Stable Biocatalysts (Department of Biochemistry, 2020-2023) |
| Arefiev Ihor | Design of Dioxygenases to Catalyze Sesquiterpenes (Department of Biophysics and Medical Informatics, National Taras Shevchenko University of Kyiv, 2022-2023) |
| Kohutekova Tana | Directed Evolution of Enzymes on Microfluidic Chip (Department of Biomedical Engineering, FEKT VUT, 2021-2023) |
| Jakab Karol | Rational Design of Active-Site Loops in Dioxygenases Using Molecular Modelling Methods (Department of Biochemistry, 2021-2023) |
| Szotkowska Veronika | The Study of Protein Unfolding Utilizing Molecular Dynamics Simulation (RECETOX, 2019-2023) |
| Smrckova Anna | Molecular Principles of the Bioluminescence Resonance Energy Transfer and Their Biotechnological Applications (Department of Experimental Biology, 2019-2022) |
| Lacko David | Platform for Biological Sequence Analysis Using Machine Learning (Department of Computer Systems, FIT VUT, 2019-2022) |
| Pluskal Daniel | Biochemical Analysis of a Luciferase Complex (Department of Biochemistry, 2018-2021) |
| Faldynova Hana | Engineering of Protein Solubility (Department of Experimental Biology, 2018-2021) |
| Marko Julius | Prediction of the Effect of Mutation on Protein Solubility Using Machine Learning (Department of Information Systems, FIT VUT, 2017-2020) |
| Borko Simeon | Identification of Related Enzymes (Department of Information Systems FIT VUT, 2017-2020) |
| Slanska Michaela | Development of Fluorogenic Substrates for Enzyme Kinetics and Protein Labelling (Department of Biochemistry, 2017-2020) |
| Slanska Katerina | Study of Protein Solubility and Aggregation (Department of Biochemistry, 2016-2019) |
| Fronkova Sabina | New Trends in Methodologies for Structural Analysis of Enzymes (Department of Molecular Biology and Genetics, 2018-2020) |
| Hubacek Michal | Utilization of Non-canonical Amino Acids in Protein Engineering (Department of Molecular Biology and Genetics, 2016-2017) |
| Libichova Lenka | Methods for Construction of Smart Mutant Libraries in Protein Engineering (Department of Molecular Biology and Genetics, 2016-2017) |
| Vasina Michal | Application of Microfluidics in Characterisation of Substrate Specificity of Halogenalkane Dehalogenases (Department of Biophysical Chemistry, 2016-2017) |
| Nemeth Robin | Study and Engineering of Tunnels in Proteins (Department of Biochemistry, 2016-2017) |
| Dockalova Veronika | Photophysical Characteristics of Fluorescent Substrates for Enzymology (Department of Condensed Matter Physics, 2015-2016) |
| Toul Martin | Kinetic Mechanism of Ancestral Haloalkane Dehalogenase (Department of Biochemistry, 2015-2016) |
| Markova Klara | Crystallization and Structural Characterization of Stable Variants of Haloalkane Dehalogenase DhaA (Department of Experimental Biology, 2015-2016) |
| Solansky Pavel | Application of Microfluidics in Metabolic Engineering (Department of Experimental Biology, 2015-2016) |
| Stourac Jan | A System for Integration of Bioinformatics Tools for Analyzing Protein Tunnels (Department of Computer Systems and Communications, 2014-2015) |
| Korenciakova Zuzana | Development of Fluorescent Substrates for Enzymologic Applications (Department of Biophysical Chemistry, 2014-2015) |
| Vavra Ondrej | Correlated Mutations in Proteins (Department of Experimental Biology, 2013-2014) |
| Kunka Antonin | Inhibitors of Halogenalkane Dehalogenases as Potential Antituberculotics (Department of Biochemistry, 2013-2014) |
| Surgentova Marta | Computational Analysis of Protein Tunnels (Institute of Biostatistics and Analyses, 2012-2013) |
| Szelcsanyiova Petra | Screening of Isolated or Evolved Biocatalysts with High Stability a Activity In vitro and In vivo (Department of Microbiology and Molecular Biotechnology, 2011-2012) |
| Buryska Tomas | Developement of Haloalkane Dehalogenase Inhibitors (Department of Biochemistry, 2010-2011) |
| Ghazalova Tereza | Teoretical Tools for Engineering of Protein Tunnels (National Centre for Biomolecular Research, 2010-2011) |
| Modrava Veronika | Virtual Screening of Biologically Active Compounds (National Centre for Biomolecular Research, 2010-2011) |
| Tischler Jakub | Prediction of Effect of Amino Acid Substitution on Protein Function (Research Centre for Toxic Compounds in the Environment, 2010-2011) |
| Harnos Jakub | Structure, Function and Evolution of Haloalkane Dehalogenases (Department of Experimental Biology, 2010-2011) |
| Hankeova Simona | Effect of Ions on Catalytic Function of Hydrolytic Enzymes (Department of Experimental Biology, 2009-2010) |
| Bednar David | Molecular Modelling of Haloalkane Dehalogenase Activity with Cyclodiene Insecticides (Department of Biochemistry, 2009-2010) |
| Drienovska Ivana | Characterization of Novel Biocatalyst Haloalkane Dehalogenase DhcA from Halophilic Microorganism Hahella chejuensis KCTC 2396 (Department of Biochemistry, 2009-2010) |
| Matejicek Jiri | Calculation of Attributes for Prediction of Effects of Mutation on Protein Function (Brno University of Technology, Faculty of Information Technology, 2008-2009) |
| Lisak Peter | Development of Meta-Server for Prediction of Mutations Effects on Protein Function (Brno University of Technology, Faculty of Information Technology, 2008-2009) |
| Daniel Lukas | Study of Substrate Specificity of Haloalkane Dehalogenases by Virtual Screening (Institute of Experimental Biology, 2008-2009) |
| Polinek Jiri | Novel Bacterial Sources of Haloalkane Dehalogenases and Study of their Function (Department of Microbiology, 2006-2007) |
| Dvorak Pavel | Methods of Directed Evolution: Applications towards Engineering of Haloalkane Dehalogenases (Department of Molecular Biology, 2006-2007) |
| Stepankova Veronika | Medium Engineering of Haloalkane Dehalogenase Catalysis (Department of Biochemistry, 2005-2006) |
| Moninec Jiri | Development of a System for Advertising of Academic Positions (Faculty of Informatics, 2003-2004) |
| Jerabek Petr | Quantum-Mechanics Study of the Dehalogenation of the 1,2,3-trichloropropane by Haloalkane Dehalogenases (Department of Biochemistry, 2003-2004) |