Doctoral Theses

Name Thesis
Horackova Jana Analysis of Luciferase Enzymes by Molecular Modeling (Environmental Health Sciences, 2021-2025)
Velecky Jan Predicting Mutational Properties of Proteins with Machine Learning (Environmental Health Sciences, 2020-2025)
Khan Rayyan Tariq In Silico Techniques to Design Proteins and Predict Their Properties (Molecular and Cell Biology and Genetics, 2019-2025)
Kizovsky Martin Raman Microspectroscopy in Environmental Research (Environmental Health Sciences, 2019-2024)
Dvorsky Jan Development of Bioinformatics Tools and Databases for Protein Engineering (Environmental Health Sciences, 2019-2024)
Vasina Michal Application of Microfluidics in Protein and Metabolic Engineering (Environmental Health Sciences, 2019-2023)
Vavra Ondrej Relationships between Enzyme Access Pathways and Catalytic Activity by the Methods of Molecular Modeling (Environmental Health Sciences, 2017-2023)
Toul Martin Rational Protein Design Driven by Kinetic Studies (Molecular and Cell Biology and Genetics, 2018-2023)
Hon Jiri Mining of Soluble Enzymes from Genomic Databases (Department of the Information Systems, Faculty of Information Technology, Brno University of Technology, 2014-2022)
Musil Milos Computational Design of Stable Proteins (Department of the Information Systems, Faculty of Information Technology, Brno University of Technology, 2015-2021)
Kunka Antonin Analysis of Protein Stability and Aggregation (Microbiology, 2016-2021)
Vanacek Pavel Automated Exploration and Characterization of Novel Haloalkane Dehalogenases (Molecular and Cell Biology and Genetics, 2014-2020)
Buryska Tomas Microfluidics in Enzyme Research (Microbiology, 2013-2018)
Liskova Veronika Protein Engineering for Analysis of Structure-Function Relationships of Enzymes (Molecular and Cell Biology, 2012-2018)
Bednar David Molecular Modelling of Structure-Function Relationships in Enzymes (Molecular and Cell Biology, 2012-2017)
Bendl Jaroslav Prediction of the Effect of Amino Acid Substitutions on Protein Function (Department of Computer Systems, Faculty of Information Technology, 2011-2016)
Daniel Lukas Molecular Modeling of Enzymes’ Substrate Specificity (Ecotoxicology, 2011-2016)
Dvorak Pavel Engineering of the Synthetic Metabolic Pathway for Biodegradation of an Environmental Pollutant (Molecular and Cellular Biology, 2010-2014)
Stepankova Veronika Biocatalysis in Non-Conventional Media (Biochemistry, 2009-2013)
Hasan Khomaini Haloalkane dehalogenase from Unique Plant-Pathogenic Bacterium Agrobacterium tumefaciens C58: Biochemical Characteristics and Engineering (Environmental Chemistry, 2008-2012)
Bidmanova Sarka Development of Optical Biosensors for Monitoring of Pollutants in the Environment (Environmental Chemistry, 2008-2012)
Brezovsky Jan Computer Modelling of Enzymatic Reactions (Environmental Chemistry, 2007-2011)
Chovancova Eva Bioinformatic Analysis and Design of Haloalkane Dehalogenases (Environmental Chemistry, 2004-2011)
Koudelakova Tana Isolation and Construction of Biocatalysts for Environmental Applications (Environmental Chemistry, 2004-2011)
Klvana Martin Structure-Function Relationships of Haloalkane Dehalogenases (Microbiology, 2004-2009)
Pavlova Martina Screening and in vitro Construction of Environmental Biocatalysts (Environmental Chemistry, 2001-2008)
Chaloupkova Radka Structure-Function Relationships of Haloalkane Dehalogenase Enzymes (Biomolecular Chemistry, 2001-2008)
Monincova Marta Functional Characterization and Classification of Haloalkane Dehalogenases (Biomolecular Chemistry, 2002-2008)
Bohac Michal Computational Modelling of Enzymatic Dehalogenation Reactions (Department of Environmental Chemistry and Ecotoxicology, 2001-2004)
Kmunicek Jan Rational Re-Design of Haloalkane Dehalogenases Guided by Comparative Binding Energy Analysis (Department of Physical Chemistry, 1999-2003)
Jesenska Andrea Detoxification of Halogenated Aliphatic Compounds by Mycobacteria (Department of Environmental Chemistry and Ecotoxicology, 1997-2002)
Hynkova Kamila Application of Gas Chromatography and Mass Spectroscopy for Study of Kinetics of Dehalogenation Reactions (Department of Environmental Chemistry and Ecotoxicology, 1997-2000)
Kuty Michal Application of Quantum Chemistry Methods for Study of Biodegradation Reactions (Department of Organic Chemistry, 1996-1999)

Environmental Excursions
Our Students at Czech PhD Bioinformatics Conference
Exploring Protein Structures at ESRF Synchrotron
Spring Outreach Seminar
Zbynek at HTCD Conference 2026
Niek’s Research Stay
Monika Among Finalists of “Bystre hlavy” Competition